J4_3J9W_006
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAG*CGCC*GGA*UGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9W_006 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.1444
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|BA|U|340
3J9W|1|BA|G|341
3J9W|1|BA|A|342
3J9W|1|BA|A|343
3J9W|1|BA|G|344
*
3J9W|1|BA|C|360
3J9W|1|BA|G|361
3J9W|1|BA|C|362
3J9W|1|BA|C|363
*
3J9W|1|BA|G|367
3J9W|1|BA|G|368
3J9W|1|BA|A|369
*
3J9W|1|BA|U|381
3J9W|1|BA|G|382
3J9W|1|BA|U|383
3J9W|1|BA|A|384
3J9W|1|BA|G|385
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BF
- 50S ribosomal protein uL4
- Chain BX
- 50S ribosomal protein uL24
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