J4_3J9W_007

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CGCAG*CGAG*CGCAUGAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_007 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4825

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|BA|C|645
3J9W|1|BA|A|646
3J9W|1|BA|A|647
3J9W|1|BA|G|648
*
3J9W|1|BA|C|670
3J9W|1|BA|G|671
3J9W|1|BA|C|672
3J9W|1|BA|A|673
3J9W|1|BA|G|674
*
3J9W|1|BA|C|681
3J9W|1|BA|G|682
3J9W|1|BA|A|683
3J9W|1|BA|G|684
*
3J9W|1|BA|C|696
3J9W|1|BA|G|697
3J9W|1|BA|C|698
3J9W|1|BA|A|699
3J9W|1|BA|U|700
3J9W|1|BA|G|701
3J9W|1|BA|A|702
3J9W|1|BA|G|703

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein bL35

Chain BF

50S ribosomal protein uL4

Chain BO

50S ribosomal protein uL15