J4_3J9W_008

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG*CC*GAUC*GG

Length

14 nucleotides

Bulged bases

3J9W|1|BA|G|1311, 3J9W|1|BA|A|1312, 3J9W|1|BA|A|1314, 3J9W|1|BA|U|1692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_008 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.2443

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

3J9W|1|BA|C|1310
3J9W|1|BA|G|1311
3J9W|1|BA|A|1312
3J9W|1|BA|A|1313
3J9W|1|BA|A|1314
3J9W|1|BA|G|1315
*
3J9W|1|BA|C|1333
3J9W|1|BA|C|1334
*
3J9W|1|BA|G|1690
3J9W|1|BA|A|1691
3J9W|1|BA|U|1692
3J9W|1|BA|C|1693
*
3J9W|1|BA|G|2038
3J9W|1|BA|G|2039

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein bL32

Chain BQ

50S ribosomal protein bL17

Chain BV

50S ribosomal protein uL22