J4_3J9W_013
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAAG
- Length
- 21 nucleotides
- Bulged bases
- 3J9W|1|BA|A|2000
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9W_013 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1235
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|BA|C|1862
3J9W|1|BA|U|1863
3J9W|1|BA|G|1864
*
3J9W|1|BA|C|1934
3J9W|1|BA|G|1935
*
3J9W|1|BA|C|1953
3J9W|1|BA|C|1954
3J9W|1|BA|U|1955
3J9W|1|BA|A|1956
3J9W|1|BA|A|1957
3J9W|1|BA|G|1958
3J9W|1|BA|G|1959
3J9W|1|BA|U|1960
3J9W|1|BA|A|1961
3J9W|1|BA|G|1962
*
3J9W|1|BA|C|1996
3J9W|1|BA|G|1997
3J9W|1|BA|A|1998
3J9W|1|BA|A|1999
3J9W|1|BA|A|2000
3J9W|1|BA|G|2001
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AX
- Transfer RNA; tRNA
- Chain BD
- 50S ribosomal protein uL2
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