J4_3J9Y_003

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

3J9Y|1|A|G|1271, 3J9Y|1|A|A|1272, 3J9Y|1|A|U|1273, 3J9Y|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Y_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0866

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

3J9Y|1|A|C|1270
3J9Y|1|A|G|1271
3J9Y|1|A|A|1272
3J9Y|1|A|U|1273
3J9Y|1|A|A|1274
3J9Y|1|A|A|1275
3J9Y|1|A|A|1276
*
3J9Y|1|A|U|1294
3J9Y|1|A|C|1295
*
3J9Y|1|A|G|1645
3J9Y|1|A|C|1646
3J9Y|1|A|U|1647
3J9Y|1|A|U|1648
*
3J9Y|1|A|A|2009
3J9Y|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22