J4_3J9Y_005

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

3J9Y|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Y_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0719

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J9Y|1|A|U|1313
3J9Y|1|A|C|1314
*
3J9Y|1|A|G|1338
3J9Y|1|A|G|1339
3J9Y|1|A|U|1340
3J9Y|1|A|G|1341
3J9Y|1|A|A|1342
3J9Y|1|A|G|1343
*
3J9Y|1|A|C|1404
3J9Y|1|A|U|1405
*
3J9Y|1|A|A|1597
3J9Y|1|A|A|1598
3J9Y|1|A|U|1599
3J9Y|1|A|C|1600
3J9Y|1|A|G|1601
3J9Y|1|A|U|1602
3J9Y|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23