J4_3J9Y_011

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

3J9Y|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Y_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2943

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3J9Y|1|a|G|115
3J9Y|1|a|A|116
3J9Y|1|a|G|117
3J9Y|1|a|U|118
3J9Y|1|a|A|119
3J9Y|1|a|A|120
3J9Y|1|a|U|121
3J9Y|1|a|G|122
*
3J9Y|1|a|U|239
3J9Y|1|a|G|240
*
3J9Y|1|a|C|286
3J9Y|1|a|U|287
3J9Y|1|a|A|288
3J9Y|1|a|G|289
*
3J9Y|1|a|C|311
3J9Y|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17