J4_3J9Y_012

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

3J9Y|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Y_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1765

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3J9Y|1|a|G|142
3J9Y|1|a|A|143
3J9Y|1|a|G|144
*
3J9Y|1|a|C|178
3J9Y|1|a|A|179
3J9Y|1|a|U|180
3J9Y|1|a|A|181
3J9Y|1|a|A|182
3J9Y|1|a|C|183
3J9Y|1|a|G|184
*
3J9Y|1|a|C|193
3J9Y|1|a|C|194
3J9Y|1|a|A|195
3J9Y|1|a|A|196
3J9Y|1|a|A|197
3J9Y|1|a|G|198
*
3J9Y|1|a|U|219
3J9Y|1|a|G|220
3J9Y|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20