J4_3J9Z_012
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 3J9Z|1|S6|U|8, 3J9Z|1|S6|A|47, 3J9Z|1|S6|U|48, 3J9Z|1|S6|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9Z_012 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.2142
- The information below is about J4_9DFC_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
3J9Z|1|S6|G|7
3J9Z|1|S6|U|8
3J9Z|1|S6|G|9
3J9Z|1|S6|G|10
*
3J9Z|1|S6|C|26
3J9Z|1|S6|G|27
3J9Z|1|S6|U|28
*
3J9Z|1|S6|A|44
3J9Z|1|S6|A|45
3J9Z|1|S6|G|46
3J9Z|1|S6|A|47
3J9Z|1|S6|U|48
3J9Z|1|S6|C|49
3J9Z|1|S6|G|50
*
3J9Z|1|S6|C|66
3J9Z|1|S6|C|67
Current chains
- Chain S6
- P-tRNA
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 50S ribosomal protein L16
- Chain S1
- Elongation factor G
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
- Chain SM
- 30S ribosomal protein S13
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