J4_3J9Z_017
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 3J9Z|1|S7|U|8, 3J9Z|1|S7|A|9, 3J9Z|1|S7|U|47, 3J9Z|1|S7|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J9Z_017 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.4713
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
3J9Z|1|S7|A|7
3J9Z|1|S7|U|8
3J9Z|1|S7|A|9
3J9Z|1|S7|G|10
*
3J9Z|1|S7|C|25
3J9Z|1|S7|A|26
3J9Z|1|S7|G|27
*
3J9Z|1|S7|C|43
3J9Z|1|S7|G|44
3J9Z|1|S7|U|45
3J9Z|1|S7|G|46
3J9Z|1|S7|U|47
3J9Z|1|S7|C|48
3J9Z|1|S7|C|49
*
3J9Z|1|S7|G|65
3J9Z|1|S7|U|66
Current chains
- Chain S7
- E-tRNA
Nearby chains
- Chain L2
- 50S ribosomal protein L33
- Chain SG
- 30S ribosomal protein S7
Coloring options: