J4_3JA1_003

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

3JA1|1|LA|U|653, 3JA1|1|LA|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JA1_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5034

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

3JA1|1|LA|C|601
3JA1|1|LA|A|602
3JA1|1|LA|A|603
3JA1|1|LA|G|604
*
3JA1|1|LA|C|624
3JA1|1|LA|G|625
3JA1|1|LA|A|626
3JA1|1|LA|A|627
3JA1|1|LA|G|628
*
3JA1|1|LA|C|635
3JA1|1|LA|G|636
3JA1|1|LA|A|637
3JA1|1|LA|G|638
*
3JA1|1|LA|C|650
3JA1|1|LA|G|651
3JA1|1|LA|U|652
3JA1|1|LA|U|653
3JA1|1|LA|A|654
3JA1|1|LA|A|655
3JA1|1|LA|G|656

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L35

Chain LF

50S ribosomal protein L4

Chain LN

50S ribosomal protein L15