J4_3JA1_009

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

3JA1|1|LA|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JA1_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.2259

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3JA1|1|LA|C|1833
3JA1|1|LA|U|1834
3JA1|1|LA|G|1835
*
3JA1|1|LA|C|1905
3JA1|1|LA|G|1906
*
3JA1|1|LA|C|1924
3JA1|1|LA|C|1925
3JA1|1|LA|U|1926
3JA1|1|LA|A|1927
3JA1|1|LA|A|1928
3JA1|1|LA|G|1929
3JA1|1|LA|G|1930
3JA1|1|LA|U|1931
3JA1|1|LA|A|1932
3JA1|1|LA|G|1933
*
3JA1|1|LA|C|1967
3JA1|1|LA|G|1968
3JA1|1|LA|A|1969
3JA1|1|LA|A|1970
3JA1|1|LA|U|1971
3JA1|1|LA|G|1972

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LD

50S ribosomal protein L2

Chain S2

Transfer RNA; tRNA

Chain SA

Small subunit ribosomal RNA; SSU rRNA