J4_3JAG_006

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

3JAG|1|5|A|2366, 3JAG|1|5|U|2369, 3JAG|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAG|1|5|C|2365
3JAG|1|5|A|2366
3JAG|1|5|A|2367
3JAG|1|5|A|2368
3JAG|1|5|U|2369
3JAG|1|5|A|2370
3JAG|1|5|U|2371
*
3JAG|1|5|A|2389
3JAG|1|5|G|2390
3JAG|1|5|G|2391
*
3JAG|1|5|C|2824
3JAG|1|5|A|2825
3JAG|1|5|U|2826
3JAG|1|5|G|2827
3JAG|1|5|U|2828
3JAG|1|5|U|2829
*
3JAG|1|5|A|3856
3JAG|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31