3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CAAAUAU*AGG*CAUGUU*AG
Length
18 nucleotides
Bulged bases
3JAG|1|5|A|2366, 3JAG|1|5|U|2369, 3JAG|1|5|U|2828
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAG|1|5|C|2365
3JAG|1|5|A|2366
3JAG|1|5|A|2367
3JAG|1|5|A|2368
3JAG|1|5|U|2369
3JAG|1|5|A|2370
3JAG|1|5|U|2371
*
3JAG|1|5|A|2389
3JAG|1|5|G|2390
3JAG|1|5|G|2391
*
3JAG|1|5|C|2824
3JAG|1|5|A|2825
3JAG|1|5|U|2826
3JAG|1|5|G|2827
3JAG|1|5|U|2828
3JAG|1|5|U|2829
*
3JAG|1|5|A|3856
3JAG|1|5|G|3857

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain P
uL22
Chain R
eL19
Chain d
eL31

Coloring options:

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