J4_3JAJ_001
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 3JAJ|1|3|U|8, 3JAJ|1|3|U|47, 3JAJ|1|3|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JAJ_001 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2167
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
3JAJ|1|3|G|7
3JAJ|1|3|U|8
3JAJ|1|3|A|9
3JAJ|1|3|G|10
*
3JAJ|1|3|C|25
3JAJ|1|3|G|26
3JAJ|1|3|U|27
*
3JAJ|1|3|A|43
3JAJ|1|3|A|44
3JAJ|1|3|G|45
3JAJ|1|3|G|46
3JAJ|1|3|U|47
3JAJ|1|3|C|48
3JAJ|1|3|C|49
*
3JAJ|1|3|G|65
3JAJ|1|3|C|66
Current chains
- Chain 3
- Val tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- Ribosomal protein uL16
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: