J4_3JAJ_009
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 3JAJ|1|S2|A|672, 3JAJ|1|S2|A|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JAJ_009 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1297
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
3JAJ|1|S2|A|671
3JAJ|1|S2|A|672
3JAJ|1|S2|G|673
*
3JAJ|1|S2|C|1032
3JAJ|1|S2|G|1033
3JAJ|1|S2|A|1034
3JAJ|1|S2|A|1035
3JAJ|1|S2|A|1036
3JAJ|1|S2|G|1037
*
3JAJ|1|S2|C|1078
3JAJ|1|S2|C|1079
3JAJ|1|S2|A|1080
3JAJ|1|S2|U|1081
3JAJ|1|S2|A|1082
3JAJ|1|S2|A|1083
3JAJ|1|S2|A|1084
3JAJ|1|S2|C|1085
3JAJ|1|S2|G|1086
3JAJ|1|S2|A|1087
3JAJ|1|S2|U|1088
3JAJ|1|S2|G|1089
*
3JAJ|1|S2|U|1160
3JAJ|1|S2|U|1161
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SL
- Ribosomal protein uS17
- Chain SN
- Ribosomal protein uS15
- Chain SO
- Ribosomal protein uS11
- Chain SW
- Ribosomal protein uS8
- Chain SX
- Ribosomal protein uS12
- Chain Sa
- Ribosomal protein eS26
- Chain n
- Ribosomal protein eL41
- Chain p
- Ribosomal protein eL43
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