J4_3JAM_002

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

3JAM|1|2|A|1025, 3JAM|1|2|C|1027, 3JAM|1|2|U|1028, 3JAM|1|2|A|1029, 3JAM|1|2|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JAM_002 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.0701

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

3JAM|1|2|A|621
3JAM|1|2|A|622
3JAM|1|2|G|623
*
3JAM|1|2|C|974
3JAM|1|2|G|975
3JAM|1|2|A|976
3JAM|1|2|A|977
3JAM|1|2|A|978
3JAM|1|2|G|979
*
3JAM|1|2|C|1020
3JAM|1|2|C|1021
3JAM|1|2|A|1022
3JAM|1|2|U|1023
3JAM|1|2|A|1024
3JAM|1|2|A|1025
3JAM|1|2|A|1026
3JAM|1|2|C|1027
3JAM|1|2|U|1028
3JAM|1|2|A|1029
3JAM|1|2|U|1030
3JAM|1|2|G|1031
*
3JAM|1|2|U|1102
3JAM|1|2|U|1103

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

uS17

Chain N

uS15

Chain O

uS11

Chain W

uS8

Chain X

uS12

Chain a

eS26

Chain h

eL41