J4_8C3A_022

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

8C3A|1|CM|A|621, 8C3A|1|CM|A|1011, 8C3A|1|CM|C|1013, 8C3A|1|CM|U|1014, 8C3A|1|CM|A|1015, 8C3A|1|CM|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8C3A|1|CM|A|620
8C3A|1|CM|A|621
8C3A|1|CM|G|622
*
8C3A|1|CM|C|960
8C3A|1|CM|G|961
8C3A|1|CM|A|962
8C3A|1|CM|A|963
8C3A|1|CM|A|964
8C3A|1|CM|G|965
*
8C3A|1|CM|C|1006
8C3A|1|CM|C|1007
8C3A|1|CM|A|1008
8C3A|1|CM|U|1009
8C3A|1|CM|A|1010
8C3A|1|CM|A|1011
8C3A|1|CM|A|1012
8C3A|1|CM|C|1013
8C3A|1|CM|U|1014
8C3A|1|CM|A|1015
8C3A|1|CM|U|1016
8C3A|1|CM|G|1017
*
8C3A|1|CM|U|1088
8C3A|1|CM|U|1089

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L41

Chain CK

60S ribosomal protein L43-A

Chain CY

40S ribosomal protein S11A

Chain DA

40S ribosomal protein S13

Chain DB

40S ribosomal protein S14-A

Chain DJ

40S ribosomal protein S22-A

Chain DK

Ribosomal protein S23 (S12)

Chain DN

40S ribosomal protein S26