3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CCCAAG*CCCAGCCC*GAC*GGUAGCGG
Length
25 nucleotides
Bulged bases
3JAN|1|5|C|216, 3JAN|1|5|C|217, 3JAN|1|5|C|245
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|5|C|194
3JAN|1|5|C|195
3JAN|1|5|C|196
3JAN|1|5|A|197
3JAN|1|5|A|198
3JAN|1|5|G|199
*
3JAN|1|5|C|215
3JAN|1|5|C|216
3JAN|1|5|C|217
3JAN|1|5|A|218
3JAN|1|5|G|219
3JAN|1|5|C|220
3JAN|1|5|C|221
3JAN|1|5|C|222
*
3JAN|1|5|G|226
3JAN|1|5|A|227
3JAN|1|5|C|228
*
3JAN|1|5|G|240
3JAN|1|5|G|241
3JAN|1|5|U|242
3JAN|1|5|A|243
3JAN|1|5|G|244
3JAN|1|5|C|245
3JAN|1|5|G|246
3JAN|1|5|G|247

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
Ribosomal protein uL4
Chain Y
Ribosomal protein uL24

Coloring options:

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