J4_3JAN_006

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

3JAN|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|2618
3JAN|1|5|G|2619
*
3JAN|1|5|U|2637
3JAN|1|5|G|2638
3JAN|1|5|U|2639
3JAN|1|5|G|2640
3JAN|1|5|A|2641
3JAN|1|5|A|2642
*
3JAN|1|5|U|2692
3JAN|1|5|G|2693
3JAN|1|5|G|2694
3JAN|1|5|A|2695
3JAN|1|5|A|2696
3JAN|1|5|A|2697
3JAN|1|5|G|2698
*
3JAN|1|5|U|2718
3JAN|1|5|C|2719

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain U

Ribosomal protein eL22

Chain g

Ribosomal protein eL34

Chain k

Ribosomal protein eL38