J4_3JBN_004

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UC*GAGUCG*CUAAUACG*UAAA

Length

20 nucleotides

Bulged bases

3JBN|1|AA|C|306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|U|112
3JBN|1|AA|C|113
*
3JBN|1|AA|G|274
3JBN|1|AA|A|275
3JBN|1|AA|G|276
3JBN|1|AA|U|277
3JBN|1|AA|C|278
3JBN|1|AA|G|279
*
3JBN|1|AA|C|300
3JBN|1|AA|U|301
3JBN|1|AA|A|302
3JBN|1|AA|A|303
3JBN|1|AA|U|304
3JBN|1|AA|A|305
3JBN|1|AA|C|306
3JBN|1|AA|G|307
*
3JBN|1|AA|U|324
3JBN|1|AA|A|325
3JBN|1|AA|A|326
3JBN|1|AA|A|327

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AL

60S ribosomal protein eL13

Chain AP

60S ribosomal protein eL15

Chain Ab

60S ribosomal protein eL36