J4_3JBN_010
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 3JBN|1|AA|U|2607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JBN_010 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1286
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBN|1|AA|C|2485
3JBN|1|AA|U|2486
3JBN|1|AA|G|2487
*
3JBN|1|AA|C|2541
3JBN|1|AA|G|2542
*
3JBN|1|AA|C|2560
3JBN|1|AA|U|2561
3JBN|1|AA|U|2562
3JBN|1|AA|A|2563
3JBN|1|AA|A|2564
3JBN|1|AA|G|2565
3JBN|1|AA|G|2566
3JBN|1|AA|U|2567
3JBN|1|AA|A|2568
3JBN|1|AA|G|2569
*
3JBN|1|AA|U|2603
3JBN|1|AA|G|2604
3JBN|1|AA|A|2605
3JBN|1|AA|A|2606
3JBN|1|AA|U|2607
3JBN|1|AA|G|2608
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AD
- 60S ribosomal protein uL2
- Chain Ag
- 60S ribosomal protein eL41
Coloring options: