J4_3JBO_001
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 3JBO|1|7|U|8, 3JBO|1|7|U|47, 3JBO|1|7|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JBO_001 not in the Motif Atlas
- Homologous match to J4_4V90_004
- Geometric discrepancy: 0.3133
- The information below is about J4_4V90_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JBO|1|7|G|7
3JBO|1|7|U|8
3JBO|1|7|G|9
3JBO|1|7|G|10
*
3JBO|1|7|C|25
3JBO|1|7|G|26
3JBO|1|7|U|27
3JBO|1|7|C|28
*
3JBO|1|7|G|42
3JBO|1|7|A|43
3JBO|1|7|A|44
3JBO|1|7|G|45
3JBO|1|7|G|46
3JBO|1|7|U|47
3JBO|1|7|C|48
3JBO|1|7|G|49
*
3JBO|1|7|C|65
3JBO|1|7|C|66
Current chains
- Chain 7
- P/E-tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ai
- 60S ribosomal protein eL44
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