J4_3JBO_004

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UC*GAGUCG*CUAAUACG*UAAA

Length

20 nucleotides

Bulged bases

3JBO|1|AA|C|306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|U|112
3JBO|1|AA|C|113
*
3JBO|1|AA|G|274
3JBO|1|AA|A|275
3JBO|1|AA|G|276
3JBO|1|AA|U|277
3JBO|1|AA|C|278
3JBO|1|AA|G|279
*
3JBO|1|AA|C|300
3JBO|1|AA|U|301
3JBO|1|AA|A|302
3JBO|1|AA|A|303
3JBO|1|AA|U|304
3JBO|1|AA|A|305
3JBO|1|AA|C|306
3JBO|1|AA|G|307
*
3JBO|1|AA|U|324
3JBO|1|AA|A|325
3JBO|1|AA|A|326
3JBO|1|AA|A|327

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AL

60S ribosomal protein eL13

Chain AP

60S ribosomal protein eL15

Chain Ab

60S ribosomal protein eL36