J4_3JBO_006

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAACUAU*AGACUGAAGU*AAAU*AG

Length

23 nucleotides

Bulged bases

3JBO|1|AA|A|1601, 3JBO|1|AA|U|1604, 3JBO|1|AA|A|1631, 3JBO|1|AA|A|2147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|C|1600
3JBO|1|AA|A|1601
3JBO|1|AA|A|1602
3JBO|1|AA|C|1603
3JBO|1|AA|U|1604
3JBO|1|AA|A|1605
3JBO|1|AA|U|1606
*
3JBO|1|AA|A|1624
3JBO|1|AA|G|1625
3JBO|1|AA|A|1626
3JBO|1|AA|C|1627
3JBO|1|AA|U|1628
3JBO|1|AA|G|1629
3JBO|1|AA|A|1630
3JBO|1|AA|A|1631
3JBO|1|AA|G|1632
3JBO|1|AA|U|1633
*
3JBO|1|AA|A|2145
3JBO|1|AA|A|2146
3JBO|1|AA|A|2147
3JBO|1|AA|U|2148
*
3JBO|1|AA|A|2645
3JBO|1|AA|G|2646

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AT

60S ribosomal protein eL19

Chain AW

60S ribosomal protein uL22

Chain Aa

60S ribosomal protein eL34