J4_3JBP_010

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3JBP|1|AA|U|2607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JBP_010 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1328

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|C|2485
3JBP|1|AA|U|2486
3JBP|1|AA|G|2487
*
3JBP|1|AA|C|2541
3JBP|1|AA|G|2542
*
3JBP|1|AA|C|2560
3JBP|1|AA|U|2561
3JBP|1|AA|U|2562
3JBP|1|AA|A|2563
3JBP|1|AA|A|2564
3JBP|1|AA|G|2565
3JBP|1|AA|G|2566
3JBP|1|AA|U|2567
3JBP|1|AA|A|2568
3JBP|1|AA|G|2569
*
3JBP|1|AA|U|2603
3JBP|1|AA|G|2604
3JBP|1|AA|A|2605
3JBP|1|AA|A|2606
3JBP|1|AA|U|2607
3JBP|1|AA|G|2608

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AD

60S ribosomal protein uL2

Chain Ag

60S ribosomal protein eL41