J4_3JBP_011

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CAAAG*UUGAU*AAC*GUG

Length

16 nucleotides

Bulged bases

3JBP|1|AA|A|2996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JBP_011 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.1459

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|C|2993
3JBP|1|AA|A|2994
3JBP|1|AA|A|2995
3JBP|1|AA|A|2996
3JBP|1|AA|G|2997
*
3JBP|1|AA|U|3051
3JBP|1|AA|U|3052
3JBP|1|AA|G|3053
3JBP|1|AA|A|3054
3JBP|1|AA|U|3055
*
3JBP|1|AA|A|3079
3JBP|1|AA|A|3080
3JBP|1|AA|C|3081
*
3JBP|1|AA|G|3090
3JBP|1|AA|U|3091
3JBP|1|AA|G|3092

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AV

60S ribosomal protein eL21

Chain Ai

60S ribosomal protein eL44