J4_3JBU_005

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGAUAAAGC*GCUCGC*GCGCUU*AG

Length

23 nucleotides

Bulged bases

3JBU|1|b|G|1271, 3JBU|1|b|A|1272, 3JBU|1|b|U|1273, 3JBU|1|b|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBU|1|b|C|1270
3JBU|1|b|G|1271
3JBU|1|b|A|1272
3JBU|1|b|U|1273
3JBU|1|b|A|1274
3JBU|1|b|A|1275
3JBU|1|b|A|1276
3JBU|1|b|G|1277
3JBU|1|b|C|1278
*
3JBU|1|b|G|1292
3JBU|1|b|C|1293
3JBU|1|b|U|1294
3JBU|1|b|C|1295
3JBU|1|b|G|1296
3JBU|1|b|C|1297
*
3JBU|1|b|G|1643
3JBU|1|b|C|1644
3JBU|1|b|G|1645
3JBU|1|b|C|1646
3JBU|1|b|U|1647
3JBU|1|b|U|1648
*
3JBU|1|b|A|2009
3JBU|1|b|G|2010

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22