J4_3JBV_001

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGAGUAAUGUC*GAUG*CUAG*CCA

Length

22 nucleotides

Bulged bases

3JBV|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|A|U|114
3JBV|1|A|G|115
3JBV|1|A|A|116
3JBV|1|A|G|117
3JBV|1|A|U|118
3JBV|1|A|A|119
3JBV|1|A|A|120
3JBV|1|A|U|121
3JBV|1|A|G|122
3JBV|1|A|U|123
3JBV|1|A|C|124
*
3JBV|1|A|G|237
3JBV|1|A|A|238
3JBV|1|A|U|239
3JBV|1|A|G|240
*
3JBV|1|A|C|286
3JBV|1|A|U|287
3JBV|1|A|A|288
3JBV|1|A|G|289
*
3JBV|1|A|C|311
3JBV|1|A|C|312
3JBV|1|A|A|313

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17