J4_3JBV_005

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UAGUGGAAG*CGCG*CAG*CGUACACAAAA

Length

27 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|U|293
3JBV|1|b|A|294
3JBV|1|b|G|295
3JBV|1|b|U|296
3JBV|1|b|G|297
3JBV|1|b|G|298
3JBV|1|b|A|299
3JBV|1|b|A|300
3JBV|1|b|G|301
*
3JBV|1|b|C|316
3JBV|1|b|G|317
3JBV|1|b|C|318
3JBV|1|b|G|319
*
3JBV|1|b|C|323
3JBV|1|b|A|324
3JBV|1|b|G|325
*
3JBV|1|b|C|337
3JBV|1|b|G|338
3JBV|1|b|U|339
3JBV|1|b|A|340
3JBV|1|b|C|341
3JBV|1|b|A|342
3JBV|1|b|C|343
3JBV|1|b|A|344
3JBV|1|b|A|345
3JBV|1|b|A|346
3JBV|1|b|A|347

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain e

50S ribosomal protein L3

Chain u

50S ribosomal protein L24