3D structure

PDB id
3JBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.32 Å

Loop

Sequence
GUAGCAAG*CGAAG*CGAG*CGUUAAGUUGC
Length
28 nucleotides
Bulged bases
3JBV|1|b|U|653, 3JBV|1|b|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBV|1|b|G|597
3JBV|1|b|U|598
3JBV|1|b|A|599
3JBV|1|b|G|600
3JBV|1|b|C|601
3JBV|1|b|A|602
3JBV|1|b|A|603
3JBV|1|b|G|604
*
3JBV|1|b|C|624
3JBV|1|b|G|625
3JBV|1|b|A|626
3JBV|1|b|A|627
3JBV|1|b|G|628
*
3JBV|1|b|C|635
3JBV|1|b|G|636
3JBV|1|b|A|637
3JBV|1|b|G|638
*
3JBV|1|b|C|650
3JBV|1|b|G|651
3JBV|1|b|U|652
3JBV|1|b|U|653
3JBV|1|b|A|654
3JBV|1|b|A|655
3JBV|1|b|G|656
3JBV|1|b|U|657
3JBV|1|b|U|658
3JBV|1|b|G|659
3JBV|1|b|C|660

Current chains

Chain b
RNA (2903-MER)

Nearby chains

Chain 7
50S ribosomal protein L35
Chain e
50S ribosomal protein L3
Chain l
50S ribosomal protein L15

Coloring options:

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