J4_3JBV_007

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGAUAAAG*CUCGC*GCGCUU*AG

Length

21 nucleotides

Bulged bases

3JBV|1|b|G|1271, 3JBV|1|b|A|1272, 3JBV|1|b|U|1273, 3JBV|1|b|C|1646, 3JBV|1|b|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|C|1270
3JBV|1|b|G|1271
3JBV|1|b|A|1272
3JBV|1|b|U|1273
3JBV|1|b|A|1274
3JBV|1|b|A|1275
3JBV|1|b|A|1276
3JBV|1|b|G|1277
*
3JBV|1|b|C|1293
3JBV|1|b|U|1294
3JBV|1|b|C|1295
3JBV|1|b|G|1296
3JBV|1|b|C|1297
*
3JBV|1|b|G|1643
3JBV|1|b|C|1644
3JBV|1|b|G|1645
3JBV|1|b|C|1646
3JBV|1|b|U|1647
3JBV|1|b|U|1648
*
3JBV|1|b|A|2009
3JBV|1|b|G|2010

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 3

50S ribosomal protein L32

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22