J4_3JBV_014
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 3JBV|1|V|U|8, 3JBV|1|V|U|47, 3JBV|1|V|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3JBV_014 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.4118
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3JBV|1|V|A|7
3JBV|1|V|U|8
3JBV|1|V|A|9
3JBV|1|V|G|10
*
3JBV|1|V|C|25
3JBV|1|V|A|26
3JBV|1|V|G|27
3JBV|1|V|G|28
*
3JBV|1|V|C|42
3JBV|1|V|C|43
3JBV|1|V|G|44
3JBV|1|V|U|45
3JBV|1|V|G|46
3JBV|1|V|U|47
3JBV|1|V|C|48
3JBV|1|V|C|49
*
3JBV|1|V|G|65
3JBV|1|V|U|66
Current chains
- Chain V
- RNA (76-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 50S ribosomal protein L16
Coloring options: