J4_3JBV_017

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGUUCC*GGGUGAG*CU*AAUCGUAC

Length

23 nucleotides

Bulged bases

3JBV|1|b|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBV|1|b|G|1310
3JBV|1|b|G|1311
3JBV|1|b|U|1312
3JBV|1|b|U|1313
3JBV|1|b|C|1314
3JBV|1|b|C|1315
*
3JBV|1|b|G|1337
3JBV|1|b|G|1338
3JBV|1|b|G|1339
3JBV|1|b|U|1340
3JBV|1|b|G|1341
3JBV|1|b|A|1342
3JBV|1|b|G|1343
*
3JBV|1|b|C|1404
3JBV|1|b|U|1405
*
3JBV|1|b|A|1597
3JBV|1|b|A|1598
3JBV|1|b|U|1599
3JBV|1|b|C|1600
3JBV|1|b|G|1601
3JBV|1|b|U|1602
3JBV|1|b|A|1603
3JBV|1|b|C|1604

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23