J4_3JCD_012

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCD_012 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1183

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

3JCD|1|A|G|2643
3JCD|1|A|G|2644
3JCD|1|A|G|2645
3JCD|1|A|C|2646
*
3JCD|1|A|G|2674
3JCD|1|A|A|2675
3JCD|1|A|C|2676
*
3JCD|1|A|G|2731
3JCD|1|A|G|2732
3JCD|1|A|A|2733
3JCD|1|A|A|2734
3JCD|1|A|G|2735
*
3JCD|1|A|U|2769
3JCD|1|A|G|2770
3JCD|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14