J4_3JCD_014

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

3JCD|1|a|C|183, 3JCD|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCD_014 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1613

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3JCD|1|a|G|142
3JCD|1|a|A|143
3JCD|1|a|G|144
*
3JCD|1|a|C|178
3JCD|1|a|A|179
3JCD|1|a|U|180
3JCD|1|a|A|181
3JCD|1|a|A|182
3JCD|1|a|C|183
3JCD|1|a|G|184
*
3JCD|1|a|C|193
3JCD|1|a|C|194
3JCD|1|a|A|195
3JCD|1|a|A|196
3JCD|1|a|A|197
3JCD|1|a|G|198
*
3JCD|1|a|U|219
3JCD|1|a|G|220
3JCD|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20