J4_3JCD_018

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

3JCD|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCD_018 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.124

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JCD|1|A|U|1313
3JCD|1|A|C|1314
*
3JCD|1|A|G|1338
3JCD|1|A|G|1339
3JCD|1|A|U|1340
3JCD|1|A|G|1341
3JCD|1|A|A|1342
3JCD|1|A|G|1343
*
3JCD|1|A|C|1404
3JCD|1|A|U|1405
*
3JCD|1|A|A|1597
3JCD|1|A|A|1598
3JCD|1|A|U|1599
3JCD|1|A|C|1600
3JCD|1|A|G|1601
3JCD|1|A|U|1602
3JCD|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23