J4_3JCJ_002

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCJ_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1132

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

3JCJ|1|A|G|297
3JCJ|1|A|G|298
3JCJ|1|A|A|299
3JCJ|1|A|A|300
3JCJ|1|A|G|301
*
3JCJ|1|A|C|316
3JCJ|1|A|G|317
3JCJ|1|A|C|318
3JCJ|1|A|G|319
*
3JCJ|1|A|C|323
3JCJ|1|A|A|324
3JCJ|1|A|G|325
*
3JCJ|1|A|C|337
3JCJ|1|A|G|338
3JCJ|1|A|U|339
3JCJ|1|A|A|340
3JCJ|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain T

50S ribosomal protein L24