J4_3JCJ_015

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

3JCJ|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3JCJ_015 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1411

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JCJ|1|A|G|1310
3JCJ|1|A|G|1311
3JCJ|1|A|U|1312
3JCJ|1|A|U|1313
3JCJ|1|A|C|1314
*
3JCJ|1|A|G|1338
3JCJ|1|A|G|1339
3JCJ|1|A|U|1340
3JCJ|1|A|G|1341
3JCJ|1|A|A|1342
3JCJ|1|A|G|1343
*
3JCJ|1|A|C|1404
3JCJ|1|A|U|1405
*
3JCJ|1|A|A|1597
3JCJ|1|A|A|1598
3JCJ|1|A|U|1599
3JCJ|1|A|C|1600
3JCJ|1|A|G|1601
3JCJ|1|A|U|1602
3JCJ|1|A|A|1603
3JCJ|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23

Chain b

50S ribosomal protein L34