J4_3JCS_003
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUUU*A(OMG)UUGU*AUU*AGACCGUAC
- Length
- 23 nucleotides
- Bulged bases
- 3JCS|1|1|U|1630
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|G|1599
3JCS|1|1|A|1600
3JCS|1|1|U|1601
3JCS|1|1|U|1602
3JCS|1|1|U|1603
*
3JCS|1|1|A|1627
3JCS|1|1|OMG|1628
3JCS|1|1|U|1629
3JCS|1|1|U|1630
3JCS|1|1|G|1631
3JCS|1|1|U|1632
*
3JCS|1|1|A|1771
3JCS|1|1|U|1772
3JCS|1|1|U|1773
*
3JCS|1|2|A|11
3JCS|1|2|G|12
3JCS|1|2|A|13
3JCS|1|2|C|14
3JCS|1|2|C|15
3JCS|1|2|G|16
3JCS|1|2|U|17
3JCS|1|2|A|18
3JCS|1|2|C|19
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 3
- 26S gamma ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Q
- ribosomal protein L19e
- Chain V
- ribosomal protein L23
- Chain a
- ribosomal protein L29
- Chain h
- ribosomal protein L34e
- Chain j
- ribosomal protein L37e
- Chain k
- ribosomal protein L38e
- Chain l
- ribosomal protein L39e
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