J4_3JCS_004
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAAAUAG*UG*UGCUUACGGCGG*CUC
- Length
- 26 nucleotides
- Bulged bases
- 3JCS|1|2|G|367
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|2|G|90
3JCS|1|2|C|91
3JCS|1|2|A|92
3JCS|1|2|A|93
3JCS|1|2|A|94
3JCS|1|2|A|95
3JCS|1|2|U|96
3JCS|1|2|A|97
3JCS|1|2|G|98
*
3JCS|1|2|U|122
3JCS|1|2|G|123
*
3JCS|1|2|U|357
3JCS|1|2|G|358
3JCS|1|2|C|359
3JCS|1|2|U|360
3JCS|1|2|U|361
3JCS|1|2|A|362
3JCS|1|2|C|363
3JCS|1|2|G|364
3JCS|1|2|G|365
3JCS|1|2|C|366
3JCS|1|2|G|367
3JCS|1|2|G|368
*
3JCS|1|2|C|577
3JCS|1|2|U|578
3JCS|1|2|C|579
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- 26S epsilon ribosomal RNA
- Chain B
- ribosomal protein L3
- Chain J
- ribosomal protein L14
- Chain Q
- ribosomal protein L19e
- Chain X
- ribosomal protein L24e
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