J4_3JCS_006
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAG*UUGAUUAAC*GAGACU*AAG
- Length
- 23 nucleotides
- Bulged bases
- 3JCS|1|2|A|1085, 3JCS|1|2|A|1147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|2|C|1082
3JCS|1|2|U|1083
3JCS|1|2|A|1084
3JCS|1|2|A|1085
3JCS|1|2|G|1086
*
3JCS|1|2|U|1140
3JCS|1|2|U|1141
3JCS|1|2|G|1142
3JCS|1|2|A|1143
3JCS|1|2|U|1144
3JCS|1|2|U|1145
3JCS|1|2|A|1146
3JCS|1|2|A|1147
3JCS|1|2|C|1148
*
3JCS|1|2|G|1166
3JCS|1|2|A|1167
3JCS|1|2|G|1168
3JCS|1|2|A|1169
3JCS|1|2|C|1170
3JCS|1|2|U|1171
*
3JCS|1|2|A|1180
3JCS|1|2|A|1181
3JCS|1|2|G|1182
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- ribosomal protein L18
- Chain P
- ribosomal protein L18e
- Chain S
- ribosomal protein L21e
- Chain b
- ribosomal protein L29e
- Chain n
- ribosomal protein L44e
Coloring options: