J4_3JCS_008
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAAGAU*AU*ACAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 3JCS|1|1|A|1544, 3JCS|1|2|C|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|C|1543
3JCS|1|1|A|1544
3JCS|1|1|A|1545
3JCS|1|1|A|1546
3JCS|1|1|G|1547
3JCS|1|1|A|1548
3JCS|1|1|U|1549
*
3JCS|1|1|A|1582
3JCS|1|1|U|1583
*
3JCS|1|2|A|60
3JCS|1|2|C|61
3JCS|1|2|A|62
3JCS|1|2|U|63
*
3JCS|1|2|A|598
3JCS|1|2|G|599
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- ribosomal protein L19e
- Chain T
- ribosomal protein L22
- Chain e
- ribosomal protein L31e
Coloring options: