J4_3L0U_001

3D structure

PDB id

3L0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of unmodified tRNAPhe from Escherichia coli

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

3L0U|1|A|U|8, 3L0U|1|A|U|45, 3L0U|1|A|U|47, 3L0U|1|A|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3L0U_001 not in the Motif Atlas

Homologous match to J4_3WFS_001

Geometric discrepancy: 0.2042

The information below is about J4_3WFS_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_36296.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

3L0U|1|A|A|7
3L0U|1|A|U|8
3L0U|1|A|A|9
3L0U|1|A|G|10
*
3L0U|1|A|C|25
3L0U|1|A|A|26
3L0U|1|A|G|27
*
3L0U|1|A|C|43
3L0U|1|A|G|44
3L0U|1|A|U|45
3L0U|1|A|G|46
3L0U|1|A|U|47
3L0U|1|A|C|48
3L0U|1|A|C|49
*
3L0U|1|A|G|65
3L0U|1|A|U|66

Current chains

Chain A

Unmodified tRNAPhe

Nearby chains