J4_3PIO_002

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAC*GACAGCAG*CUGCACCGAUC*GAUUGCC

Length

30 nucleotides

Bulged bases

3PIO|1|X|A|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|G|1360
3PIO|1|X|G|1361
3PIO|1|X|A|1362
3PIO|1|X|C|1363
*
3PIO|1|X|G|1394
3PIO|1|X|A|1395
3PIO|1|X|C|1396
3PIO|1|X|A|1397
3PIO|1|X|G|1398
3PIO|1|X|C|1399
3PIO|1|X|A|1400
3PIO|1|X|G|1401
*
3PIO|1|X|C|1412
3PIO|1|X|U|1413
3PIO|1|X|G|1414
3PIO|1|X|C|1415
3PIO|1|X|A|1416
3PIO|1|X|C|1417
3PIO|1|X|C|1418
3PIO|1|X|G|1419
3PIO|1|X|A|1420
3PIO|1|X|U|1421
3PIO|1|X|C|1422
*
3PIO|1|X|G|1609
3PIO|1|X|A|1610
3PIO|1|X|U|1611
3PIO|1|X|U|1612
3PIO|1|X|G|1613
3PIO|1|X|C|1614
3PIO|1|X|C|1615

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain Q

50S ribosomal protein L23