J4_3PIO_008

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

3PIO|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3PIO_008 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.1502

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

3PIO|1|X|A|1458
3PIO|1|X|U|1459
3PIO|1|X|G|1460
*
3PIO|1|X|U|1481
3PIO|1|X|U|1482
*
3PIO|1|X|G|1541
3PIO|1|X|G|1542
3PIO|1|X|G|1543
3PIO|1|X|A|1544
3PIO|1|X|G|1545
*
3PIO|1|X|C|1558
3PIO|1|X|G|1559
3PIO|1|X|A|1560
3PIO|1|X|A|1561
3PIO|1|X|G|1562
3PIO|1|X|U|1563

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains