J4_3PIP_008

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

3PIP|1|X|G|1284, 3PIP|1|X|A|1285, 3PIP|1|X|U|1286, 3PIP|1|X|A|1287, 3PIP|1|X|C|1663, 3PIP|1|X|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3PIP_008 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1393

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

3PIP|1|X|C|1283
3PIP|1|X|G|1284
3PIP|1|X|A|1285
3PIP|1|X|U|1286
3PIP|1|X|A|1287
3PIP|1|X|A|1288
3PIP|1|X|A|1289
*
3PIP|1|X|U|1307
3PIP|1|X|C|1308
*
3PIP|1|X|G|1662
3PIP|1|X|C|1663
3PIP|1|X|G|1664
3PIP|1|X|C|1665
*
3PIP|1|X|G|1992
3PIP|1|X|G|1993

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32