J4_3R8O_001

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

3R8O|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3R8O_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5606

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

3R8O|1|A|G|115
3R8O|1|A|A|116
3R8O|1|A|G|117
3R8O|1|A|U|118
3R8O|1|A|A|119
3R8O|1|A|A|120
3R8O|1|A|U|121
3R8O|1|A|G|122
*
3R8O|1|A|U|239
3R8O|1|A|G|240
*
3R8O|1|A|C|286
3R8O|1|A|U|287
3R8O|1|A|A|288
3R8O|1|A|G|289
*
3R8O|1|A|C|311
3R8O|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17