J4_3T1H_003

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

3T1H|1|A|A|798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3T1H_003 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0489

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3T1H|1|A|G|558
3T1H|1|A|G|559
3T1H|1|A|G|560
*
3T1H|1|A|C|747
3T1H|1|A|G|748
3T1H|1|A|A|749
3T1H|1|A|A|750
3T1H|1|A|A|751
3T1H|1|A|G|752
*
3T1H|1|A|C|793
3T1H|1|A|C|794
3T1H|1|A|C|795
3T1H|1|A|U|796
3T1H|1|A|A|797
3T1H|1|A|A|798
3T1H|1|A|A|799
3T1H|1|A|C|800
3T1H|1|A|G|801
3T1H|1|A|A|802
3T1H|1|A|U|803
3T1H|1|A|G|804
*
3T1H|1|A|C|856
3T1H|1|A|C|857

Current chains

Chain A

16s rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17