J4_3V7E_002

3D structure

PDB id

3V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YbxF bound to the SAM-I riboswitch aptamer

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAGAG*CG*CAAUU*AG

Length

15 nucleotides

Bulged bases

3V7E|1|D|A|209, 3V7E|1|D|U|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3V7E|1|D|C|208
3V7E|1|D|A|209
3V7E|1|D|A|210
3V7E|1|D|G|211
3V7E|1|D|A|212
3V7E|1|D|G|213
*
3V7E|1|D|C|241
3V7E|1|D|G|242
*
3V7E|1|D|C|292
3V7E|1|D|A|293
3V7E|1|D|A|294
3V7E|1|D|U|295
3V7E|1|D|U|296
*
3V7E|1|D|A|317
3V7E|1|D|G|318

Current chains

Chain D

SAM-I riboswitch aptamer with an engineered helix P3

Nearby chains

Chain C

SAM riboswitch; S box leader; SAM-I riboswitch