J4_486D_003

3D structure

PDB id

486D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES

Experimental method

X-RAY DIFFRACTION

Resolution

7.5 Å

Loop

Sequence

AUAG*UGG*CAGAU(5MC)*GU

Length

15 nucleotides

Bulged bases

486D|1|E|U|8, 486D|1|E|U|48

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_486D_003 not in the Motif Atlas

Homologous match to J4_5HR6_001

Geometric discrepancy: 0.2359

The information below is about J4_5HR6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

486D|1|E|A|7
486D|1|E|U|8
486D|1|E|A|9
486D|1|E|G|10
*
486D|1|E|U|25
486D|1|E|G|26
486D|1|E|G|27
*
486D|1|E|C|43
486D|1|E|A|44
486D|1|E|G|45
486D|1|E|A|46
486D|1|E|U|48
486D|1|E|5MC|49
*
486D|1|E|G|65
486D|1|E|U|66

Current chains

Chain E

E-SITE TRNA OF 70S RIBOSOME

Nearby chains